3
d	                 @   s|   d Z ddlZddlZddlZddlmZmZm	Z	m
Z
mZmZ ddlmZ G dd deZG dd	 d	eZG d
d de	ZdS )z
Managing statistical maps
    N   )BaseInterfaceInputSpecTraitedSpecSimpleInterfacetraitsInputMultiPathFile)split_filenamec               @   s.   e Zd ZeedddddZejdddZdS )ActivationCountInputSpecT)existsz+input file, generally a list of z-stat maps)	mandatorydescz[binarization threshold. E.g. a threshold of 1.65 corresponds to a two-sided Z-test of p<.10N)	__name__
__module____qualname__r   r   in_filesr   ZFloat	threshold r   r   9/tmp/pip-build-7vycvbft/nipype/nipype/algorithms/stats.pyr
      s   r
   c               @   s0   e Zd ZedddZedddZedddZdS )ActivationCountOutputSpecTzoutput activation count map)r   r   zpositive activation count mapznegative activation count mapN)r   r   r   r   out_fileacm_posacm_negr   r   r   r   r   #   s   r   c               @   s    e Zd ZdZeZeZdd ZdS )ActivationCountz
    Calculate a simple Activation Count Maps

    Adapted from: https://github.com/poldracklab/CNP_task_analysis/    blob/61c27f5992db9d8800884f8ffceb73e6957db8af/CNP_2nd_level_ACM.py
    c       
      C   s  t j| jjj}tj|| jjkdtjd}tj|d| jj k dtjd}|| }| jjd }t	|d }t
jj|jd| j}|d| jd< |d	| jd
< |d| jd< t j|}	|	j||	j|	jj| jd  |	j||	j|	jj| jd
  |	j||	j|	jj| jd  |S )N   )ZaxisZdtypeg      ?r   r   zacm_{}Zdiffr   posr   negr   g      )nbZconcat_imagesinputsr   ZdataobjnpZmeanr   Zfloat32r	   ospathjoincwdformatZ_resultsload	__class__Zaffineheaderto_filename)
selfZruntimeZallmapsr   r   Zacm_diffZtemplate_fnameextZ	fname_fmtimgr   r   r   _run_interface4   s&    
zActivationCount._run_interfaceN)	r   r   r   __doc__r
   Z
input_specr   Zoutput_specr,   r   r   r   r   r   )   s   r   )r-   r    Znibabelr   numpyr   Zinterfaces.baser   r   r   r   r   r   Zutils.filemanipr	   r
   r   r   r   r   r   r   <module>   s    