""" This file contains defines parameters for nipy that we use to fill settings in setup.py, the nipy top-level docstring, and for building the docs. In setup.py in particular, we exec this file, so it cannot import nipy """ # nipype version information # Remove -dev for release __version__ = "1.7.1" def get_nipype_gitversion(): """Nipype version as reported by the last commit in git Returns ------- None or str Version of Nipype according to git. """ import os import subprocess try: import nipype gitpath = os.path.realpath( os.path.join(os.path.dirname(nipype.__file__), os.path.pardir) ) except: gitpath = os.getcwd() gitpathgit = os.path.join(gitpath, ".git") if not os.path.exists(gitpathgit): return None ver = None try: o, _ = subprocess.Popen( "git describe", shell=True, cwd=gitpath, stdout=subprocess.PIPE ).communicate() except Exception: pass else: ver = o.decode().strip().split("-")[-1] return ver if __version__.endswith("-dev"): gitversion = get_nipype_gitversion() if gitversion: __version__ = "{}+{}".format(__version__, gitversion) CLASSIFIERS = [ "Development Status :: 5 - Production/Stable", "Environment :: Console", "Intended Audience :: Science/Research", "License :: OSI Approved :: Apache Software License", "Operating System :: MacOS :: MacOS X", "Operating System :: POSIX :: Linux", "Programming Language :: Python :: 3.6", "Programming Language :: Python :: 3.7", "Programming Language :: Python :: 3.8", "Programming Language :: Python :: 3.9", "Programming Language :: Python :: 3.10", "Topic :: Scientific/Engineering", ] PYTHON_REQUIRES = ">= 3.6" description = "Neuroimaging in Python: Pipelines and Interfaces" # Note: this long_description is actually a copy/paste from the top-level # README.txt, so that it shows up nicely on PyPI. So please remember to edit # it only in one place and sync it correctly. long_description = """======================================================== NIPYPE: Neuroimaging in Python: Pipelines and Interfaces ======================================================== Current neuroimaging software offer users an incredible opportunity to analyze data using a variety of different algorithms. However, this has resulted in a heterogeneous collection of specialized applications without transparent interoperability or a uniform operating interface. *Nipype*, an open-source, community-developed initiative under the umbrella of `NiPy `_, is a Python project that provides a uniform interface to existing neuroimaging software and facilitates interaction between these packages within a single workflow. Nipype provides an environment that encourages interactive exploration of algorithms from different packages (e.g., AFNI, ANTS, BRAINS, BrainSuite, Camino, FreeSurfer, FSL, MNE, MRtrix, MNE, Nipy, Slicer, SPM), eases the design of workflows within and between packages, and reduces the learning curve necessary to use different \ packages. Nipype is creating a collaborative platform for neuroimaging \ software development in a high-level language and addressing limitations of \ existing pipeline systems. *Nipype* allows you to: * easily interact with tools from different software packages * combine processing steps from different software packages * develop new workflows faster by reusing common steps from old ones * process data faster by running it in parallel on many cores/machines * make your research easily reproducible * share your processing workflows with the community """ # versions NIBABEL_MIN_VERSION = "2.1.0" NETWORKX_MIN_VERSION = "2.0" # Numpy bug in python 3.7: # https://www.opensourceanswers.com/blog/you-shouldnt-use-python-37-for-data-science-right-now.html NUMPY_MIN_VERSION = "1.15.3" SCIPY_MIN_VERSION = "0.14" TRAITS_MIN_VERSION = "4.6" DATEUTIL_MIN_VERSION = "2.2" FUTURE_MIN_VERSION = "0.16.0" SIMPLEJSON_MIN_VERSION = "3.8.0" PROV_VERSION = "1.5.2" RDFLIB_MIN_VERSION = "5.0.0" CLICK_MIN_VERSION = "6.6.0" PYDOT_MIN_VERSION = "1.2.3" NAME = "nipype" MAINTAINER = "nipype developers" MAINTAINER_EMAIL = "neuroimaging@python.org" DESCRIPTION = description LONG_DESCRIPTION = long_description URL = "http://nipy.org/nipype" DOWNLOAD_URL = "http://github.com/nipy/nipype/archives/master" LICENSE = "Apache License, 2.0" AUTHOR = "nipype developers" AUTHOR_EMAIL = "neuroimaging@python.org" PLATFORMS = "OS Independent" MAJOR = __version__.split(".")[0] MINOR = __version__.split(".")[1] MICRO = __version__.replace("-", ".").split(".")[2] ISRELEASE = ( len(__version__.replace("-", ".").split(".")) == 3 or "post" in __version__.replace("-", ".").split(".")[-1] ) VERSION = __version__ PROVIDES = ["nipype"] REQUIRES = [ "click>=%s" % CLICK_MIN_VERSION, "networkx>=%s" % NETWORKX_MIN_VERSION, "nibabel>=%s" % NIBABEL_MIN_VERSION, "numpy>=%s" % NUMPY_MIN_VERSION, "packaging", "prov>=%s" % PROV_VERSION, "pydot>=%s" % PYDOT_MIN_VERSION, "python-dateutil>=%s" % DATEUTIL_MIN_VERSION, "rdflib>=%s" % RDFLIB_MIN_VERSION, "scipy>=%s" % SCIPY_MIN_VERSION, "simplejson>=%s" % SIMPLEJSON_MIN_VERSION, "traits>=%s,!=5.0" % TRAITS_MIN_VERSION, "filelock>=3.0.0", "etelemetry>=0.2.0", ] TESTS_REQUIRES = [ "codecov", "coverage<5", "pytest", "pytest-cov", "pytest-env", "pytest-timeout", ] EXTRA_REQUIRES = { "data": ["datalad"], "doc": [ "dipy", "ipython", "matplotlib", "nbsphinx", "sphinx-argparse", "sphinx>=2.1.2", "sphinxcontrib-apidoc", ], "duecredit": ["duecredit"], "nipy": ["nitime", "nilearn", "dipy", "nipy", "matplotlib"], "profiler": ["psutil>=5.0"], "pybids": ["pybids>=0.7.0"], "specs": ["black"], "ssh": ["paramiko"], "tests": TESTS_REQUIRES, "xvfbwrapper": ["xvfbwrapper"], # 'mesh': ['mayavi'] # Enable when it works } def _list_union(iterable): return list(set(sum(iterable, []))) # Enable a handle to install all extra dependencies at once EXTRA_REQUIRES["all"] = _list_union(EXTRA_REQUIRES.values()) # dev = doc + tests + specs EXTRA_REQUIRES["dev"] = _list_union( val for key, val in EXTRA_REQUIRES.items() if key in ("doc", "tests", "specs") ) STATUS = "stable"