# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
from ..preprocess import ReconAll


def test_ReconAll_inputs():
    input_map = dict(
        FLAIR_file=dict(
            argstr="-FLAIR %s",
            extensions=None,
            min_ver="5.3.0",
        ),
        T1_files=dict(
            argstr="-i %s...",
        ),
        T2_file=dict(
            argstr="-T2 %s",
            extensions=None,
            min_ver="5.3.0",
        ),
        args=dict(
            argstr="%s",
        ),
        big_ventricles=dict(
            argstr="-bigventricles",
        ),
        brainstem=dict(
            argstr="-brainstem-structures",
        ),
        directive=dict(
            argstr="-%s",
            position=0,
            usedefault=True,
        ),
        environ=dict(
            nohash=True,
            usedefault=True,
        ),
        expert=dict(
            argstr="-expert %s",
            extensions=None,
        ),
        flags=dict(
            argstr="%s",
        ),
        hemi=dict(
            argstr="-hemi %s",
        ),
        hippocampal_subfields_T1=dict(
            argstr="-hippocampal-subfields-T1",
            min_ver="6.0.0",
        ),
        hippocampal_subfields_T2=dict(
            argstr="-hippocampal-subfields-T2 %s %s",
            min_ver="6.0.0",
        ),
        hires=dict(
            argstr="-hires",
            min_ver="6.0.0",
        ),
        mprage=dict(
            argstr="-mprage",
        ),
        mri_aparc2aseg=dict(
            xor=["expert"],
        ),
        mri_ca_label=dict(
            xor=["expert"],
        ),
        mri_ca_normalize=dict(
            xor=["expert"],
        ),
        mri_ca_register=dict(
            xor=["expert"],
        ),
        mri_edit_wm_with_aseg=dict(
            xor=["expert"],
        ),
        mri_em_register=dict(
            xor=["expert"],
        ),
        mri_fill=dict(
            xor=["expert"],
        ),
        mri_mask=dict(
            xor=["expert"],
        ),
        mri_normalize=dict(
            xor=["expert"],
        ),
        mri_pretess=dict(
            xor=["expert"],
        ),
        mri_remove_neck=dict(
            xor=["expert"],
        ),
        mri_segment=dict(
            xor=["expert"],
        ),
        mri_segstats=dict(
            xor=["expert"],
        ),
        mri_tessellate=dict(
            xor=["expert"],
        ),
        mri_watershed=dict(
            xor=["expert"],
        ),
        mris_anatomical_stats=dict(
            xor=["expert"],
        ),
        mris_ca_label=dict(
            xor=["expert"],
        ),
        mris_fix_topology=dict(
            xor=["expert"],
        ),
        mris_inflate=dict(
            xor=["expert"],
        ),
        mris_make_surfaces=dict(
            xor=["expert"],
        ),
        mris_register=dict(
            xor=["expert"],
        ),
        mris_smooth=dict(
            xor=["expert"],
        ),
        mris_sphere=dict(
            xor=["expert"],
        ),
        mris_surf2vol=dict(
            xor=["expert"],
        ),
        mrisp_paint=dict(
            xor=["expert"],
        ),
        openmp=dict(
            argstr="-openmp %d",
        ),
        parallel=dict(
            argstr="-parallel",
        ),
        subject_id=dict(
            argstr="-subjid %s",
            usedefault=True,
        ),
        subjects_dir=dict(
            argstr="-sd %s",
            genfile=True,
            hash_files=False,
        ),
        talairach=dict(
            xor=["expert"],
        ),
        use_FLAIR=dict(
            argstr="-FLAIRpial",
            min_ver="5.3.0",
            xor=["use_T2"],
        ),
        use_T2=dict(
            argstr="-T2pial",
            min_ver="5.3.0",
            xor=["use_FLAIR"],
        ),
        xopts=dict(
            argstr="-xopts-%s",
        ),
    )
    inputs = ReconAll.input_spec()

    for key, metadata in list(input_map.items()):
        for metakey, value in list(metadata.items()):
            assert getattr(inputs.traits()[key], metakey) == value


def test_ReconAll_outputs():
    output_map = dict(
        BA_stats=dict(
            altkey="BA",
            loc="stats",
        ),
        T1=dict(
            extensions=None,
            loc="mri",
        ),
        annot=dict(
            altkey="*annot",
            loc="label",
        ),
        aparc_a2009s_stats=dict(
            altkey="aparc.a2009s",
            loc="stats",
        ),
        aparc_aseg=dict(
            altkey="aparc*aseg",
            loc="mri",
        ),
        aparc_stats=dict(
            altkey="aparc",
            loc="stats",
        ),
        area_pial=dict(
            altkey="area.pial",
            loc="surf",
        ),
        aseg=dict(
            extensions=None,
            loc="mri",
        ),
        aseg_stats=dict(
            altkey="aseg",
            loc="stats",
        ),
        avg_curv=dict(
            loc="surf",
        ),
        brain=dict(
            extensions=None,
            loc="mri",
        ),
        brainmask=dict(
            extensions=None,
            loc="mri",
        ),
        curv=dict(
            loc="surf",
        ),
        curv_pial=dict(
            altkey="curv.pial",
            loc="surf",
        ),
        curv_stats=dict(
            altkey="curv",
            loc="stats",
        ),
        entorhinal_exvivo_stats=dict(
            altkey="entorhinal_exvivo",
            loc="stats",
        ),
        filled=dict(
            extensions=None,
            loc="mri",
        ),
        graymid=dict(
            altkey=["graymid", "midthickness"],
            loc="surf",
        ),
        inflated=dict(
            loc="surf",
        ),
        jacobian_white=dict(
            loc="surf",
        ),
        label=dict(
            altkey="*label",
            loc="label",
        ),
        norm=dict(
            extensions=None,
            loc="mri",
        ),
        nu=dict(
            extensions=None,
            loc="mri",
        ),
        orig=dict(
            extensions=None,
            loc="mri",
        ),
        pial=dict(
            loc="surf",
        ),
        rawavg=dict(
            extensions=None,
            loc="mri",
        ),
        ribbon=dict(
            altkey="*ribbon",
            loc="mri",
        ),
        smoothwm=dict(
            loc="surf",
        ),
        sphere=dict(
            loc="surf",
        ),
        sphere_reg=dict(
            altkey="sphere.reg",
            loc="surf",
        ),
        subject_id=dict(),
        subjects_dir=dict(),
        sulc=dict(
            loc="surf",
        ),
        thickness=dict(
            loc="surf",
        ),
        volume=dict(
            loc="surf",
        ),
        white=dict(
            loc="surf",
        ),
        wm=dict(
            extensions=None,
            loc="mri",
        ),
        wmparc=dict(
            extensions=None,
            loc="mri",
        ),
        wmparc_stats=dict(
            altkey="wmparc",
            loc="stats",
        ),
    )
    outputs = ReconAll.output_spec()

    for key, metadata in list(output_map.items()):
        for metakey, value in list(metadata.items()):
            assert getattr(outputs.traits()[key], metakey) == value