# -*- coding: utf-8 -*-
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:

import pytest

from ....testing import example_data
from .. import get_custom_path, RegAladin, RegF3D
from .test_regutils import no_nifty_tool


@pytest.mark.skipif(
    no_nifty_tool(cmd="reg_aladin"),
    reason="niftyreg is not installed. reg_aladin not found.",
)
def test_reg_aladin():
    """tests for reg_aladin interface"""
    # Create a reg_aladin object
    nr_aladin = RegAladin()

    # Check if the command is properly defined
    assert nr_aladin.cmd == get_custom_path("reg_aladin")

    # test raising error with mandatory args absent
    with pytest.raises(ValueError):
        nr_aladin.run()

    # Assign some input data
    ref_file = example_data("im1.nii")
    flo_file = example_data("im2.nii")
    rmask_file = example_data("mask.nii")
    nr_aladin.inputs.ref_file = ref_file
    nr_aladin.inputs.flo_file = flo_file
    nr_aladin.inputs.rmask_file = rmask_file
    nr_aladin.inputs.omp_core_val = 4

    cmd_tmp = "{cmd} -aff {aff} -flo {flo} -omp 4 -ref {ref} -res {res} \
-rmask {rmask}"

    expected_cmd = cmd_tmp.format(
        cmd=get_custom_path("reg_aladin"),
        aff="im2_aff.txt",
        flo=flo_file,
        ref=ref_file,
        res="im2_res.nii.gz",
        rmask=rmask_file,
    )

    assert nr_aladin.cmdline == expected_cmd


@pytest.mark.skipif(
    no_nifty_tool(cmd="reg_f3d"), reason="niftyreg is not installed. reg_f3d not found."
)
def test_reg_f3d():
    """tests for reg_f3d interface"""
    # Create a reg_f3d object
    nr_f3d = RegF3D()

    # Check if the command is properly defined
    assert nr_f3d.cmd == get_custom_path("reg_f3d")

    # test raising error with mandatory args absent
    with pytest.raises(ValueError):
        nr_f3d.run()

    # Assign some input data
    ref_file = example_data("im1.nii")
    flo_file = example_data("im2.nii")
    rmask_file = example_data("mask.nii")
    nr_f3d.inputs.ref_file = ref_file
    nr_f3d.inputs.flo_file = flo_file
    nr_f3d.inputs.rmask_file = rmask_file
    nr_f3d.inputs.omp_core_val = 4
    nr_f3d.inputs.vel_flag = True
    nr_f3d.inputs.be_val = 0.1
    nr_f3d.inputs.le_val = 0.1

    cmd_tmp = "{cmd} -be 0.100000 -cpp {cpp} -flo {flo} -le 0.100000 -omp 4 \
-ref {ref} -res {res} -rmask {rmask} -vel"

    expected_cmd = cmd_tmp.format(
        cmd=get_custom_path("reg_f3d"),
        cpp="im2_cpp.nii.gz",
        flo=flo_file,
        ref=ref_file,
        res="im2_res.nii.gz",
        rmask=rmask_file,
    )

    assert nr_f3d.cmdline == expected_cmd