# -*- coding: utf-8 -*-
# -*- coding: utf8 -*-
"""Autogenerated file - DO NOT EDIT
If you spot a bug, please report it on the mailing list and/or change the generator."""

import os

from ...base import (
    CommandLine,
    CommandLineInputSpec,
    SEMLikeCommandLine,
    TraitedSpec,
    File,
    Directory,
    traits,
    isdefined,
    InputMultiPath,
    OutputMultiPath,
)


class BRAINSPosteriorToContinuousClassInputSpec(CommandLineInputSpec):
    inputWhiteVolume = File(
        desc="White Matter Posterior Volume",
        exists=True,
        argstr="--inputWhiteVolume %s",
    )
    inputBasalGmVolume = File(
        desc="Basal Grey Matter Posterior Volume",
        exists=True,
        argstr="--inputBasalGmVolume %s",
    )
    inputSurfaceGmVolume = File(
        desc="Surface Grey Matter Posterior Volume",
        exists=True,
        argstr="--inputSurfaceGmVolume %s",
    )
    inputCsfVolume = File(
        desc="CSF Posterior Volume", exists=True, argstr="--inputCsfVolume %s"
    )
    inputVbVolume = File(
        desc="Venous Blood Posterior Volume", exists=True, argstr="--inputVbVolume %s"
    )
    inputCrblGmVolume = File(
        desc="Cerebellum Grey Matter Posterior Volume",
        exists=True,
        argstr="--inputCrblGmVolume %s",
    )
    inputCrblWmVolume = File(
        desc="Cerebellum White Matter Posterior Volume",
        exists=True,
        argstr="--inputCrblWmVolume %s",
    )
    outputVolume = traits.Either(
        traits.Bool,
        File(),
        hash_files=False,
        desc="Output Continuous Tissue Classified Image",
        argstr="--outputVolume %s",
    )


class BRAINSPosteriorToContinuousClassOutputSpec(TraitedSpec):
    outputVolume = File(desc="Output Continuous Tissue Classified Image", exists=True)


class BRAINSPosteriorToContinuousClass(SEMLikeCommandLine):
    """title: Tissue Classification

    category: BRAINS.Classify

    description: This program will generate an 8-bit continuous tissue classified image based on BRAINSABC posterior images.

    version: 3.0

    documentation-url: http://www.nitrc.org/plugins/mwiki/index.php/brains:BRAINSClassify

    license: https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt

    contributor: Vincent A. Magnotta

    acknowledgements: Funding for this work was provided by NIH/NINDS award NS050568
    """

    input_spec = BRAINSPosteriorToContinuousClassInputSpec
    output_spec = BRAINSPosteriorToContinuousClassOutputSpec
    _cmd = " BRAINSPosteriorToContinuousClass "
    _outputs_filenames = {"outputVolume": "outputVolume"}
    _redirect_x = False