3
Yd0                 @   s   d dl Z ddlmZ ddlmZmZmZmZmZmZ G dd deZ	G dd	 d	eZ
G d
d deZG dd deZG dd deZG dd deZdS )    N   )NipyBaseInterface   )TraitedSpectraitsFileOutputMultiPathBaseInterfaceInputSpec	isdefinedc               @   s   e Zd ZejdddddZejdddddd	Zejd
ddddd	Zej	ddZ
ejddddd	Zejddddd	ZedddZejdddd	ZejdddZejdddZdS )FitGLMInputSpecr   TzSession specific information generated by ``modelgen.SpecifyModel``, FitGLM does not  support multiple runs uless they are concatenated (see SpecifyModel options))Zminlenmaxlen	mandatorydescZ	CanonicalzCanonical With DerivativeZFIRzkthat specifies the hemodynamic reponse function it can be 'Canonical', 'Canonical With Derivative' or 'FIR')r   
usedefaultZCosineZ
PolynomialBlankzastring that specifies the desired drift model, to be chosen among 'Polynomial', 'Cosine', 'Blank')r   ar1Z	sphericalz;autoregressive mode is available only for the kalman methodZkalmanZolszimethod to fit the model, ols or kalma; kalman is more time consuming but it supports autoregressive modelz<restrict the fitting only to the region defined by this mask)existsr   Fz0normalize (zscore) the regressors before fitting)r   N)__name__
__module____qualname__r   Listsession_infoEnum	hrf_modeldrift_modelFloatTRmodelmethodr   maskZBoolnormalize_design_matrixsave_residualsplot_design_matrix r#   r#   N/var/www/html/virt/lib/python3.6/site-packages/nipype/interfaces/nipy/model.pyr      sJ   r   c               @   sX   e Zd ZeddZej ZeddZej Z	ej Z
ej Zej Ze ZeddZdS )FitGLMOutputSpecT)r   N)r   r   r   r   betar   Anynvbetas2dof	constantsaxisr   	reg_names	residualsar#   r#   r#   r$   r%   O   s   

r%   c               @   s(   e Zd ZdZeZeZdd Zdd Z	dS )FitGLMza
    Fit GLM model based on the specified design. Supports only single or concatenated runs.
    c       $      C   s  dd l }dd l}dd ljjj}dd ljjj}y
|j}W n  t	k
rV   ddl
m} Y nX | jj}| jjd d }t|ttfr|g}|j|d }	|	jdd}
t| jjr|j|j| jjjdk}n|j|	jd d dk}|
|d d f }~
xN|dd  D ]>}|j|dd	}	|j|	j}|j|||d d f fdd
}~qW |jd }dt|d j krv|d d }| jj}nd}d}g }x$|d d D ]}|j|d  qW |j|t|f}xDt t|D ]4}|j!|d d | d j"dd|d d |f< qW |j#d|d | jj$ |}g }g }g }x|t%|d d D ]h\}}||d 7 }||d gt|d  7 }t|d dkr||d t|d  7 }n||d 7 }q8W |r||||d}nd }|j&||||| jj'||d\}| _(| jj)rLx`t t| j(d D ]J}|d d |f |d d |f j*  |d d |f j+  |d d |f< qW | jj,rdd l-}|j.| |j/d |j0  |j1  |j2 }|j3|j4|| jj5| jj6d t7j8j9d| _:|j|j|j;jd f }|j;j4||d d f< |j<|j=||	j>| j: t7j8j9d| _?|j|j} |j@| |< |j<|j=| |	j>| j? | jjAr|jB||j;}!|j|j|f }"||!j4 |"|d d f< t7j8j9d| _C|j<|j=|"|	j>| jC |jD| _E|jF| _G|jH| _H|jI| _I| jj6dkr
t7j8j9d| _J|j|j}#|jKjL |#|< |j<|j=|#|	j>| jJ |j6| _M|j5| _N|S )Nr   )BlockParadigmZscansZ	unchanged)Zcaching   r   F)Zmmap)r,   hpfr   Zregressnamevalcondonsetduration)Zcon_idr7   r8   )r   Zhfcutr   Zadd_regsZadd_reg_nameszdesign_matrix.pdf)r   r   zbeta.niizs2.niizresiduals.niir   za.nii)Onibabelnumpynipy.modalities.fmri.glm
modalitiesfmriglmZ"nipy.modalities.fmri.design_matrixdesign_matrixr1   AttributeErrorZ*nipy.modalities.fmri.experimental_paradigminputsr   
isinstancestrbytesloadZ	get_fdatar
   r   
asanyarraydataobjonesshapeZasarrayZconcatenatelistkeysr   appendzeroslenrangearrayZreshapeZlinspacer   	enumerateZ
dmtx_lightr   
_reg_namesr    ZmeanZstdr"   pylabZpcolorZsavefigcloseZclfGeneralLinearModelZfitTr   r   ospathabspath
_beta_filer&   saveNifti1Imageaffine_s2_filer)   r!   dot_residuals_filer(   _nvbetar*   _dof
_constants_axis_a_filer/   Zsqueeze_model_method)$selfruntimenbnpGLMdmr1   r   Zfunctional_runsniidatar   Z
timeseriesZfunctional_runZnpdataZnscansr3   r   r-   regZreg_valsiZ
frametimesZ
conditionsZonsetsr8   r6   Zparadigmr@   rT   r?   r&   r)   Z	explainedr.   r/   r#   r#   r$   _run_interfacec   s    



"(




zFitGLM._run_interfacec             C   s~   | j  j }| j|d< | j|d< | j|d< | j|d< | j|d< | j|d< | j|d< | j	j
dkrh| j|d	< | j	jrz| j|d
< |S )Nr&   r(   r)   r*   r+   r,   r-   r   r/   r.   )_outputsgetr[   rb   r_   rc   rd   re   rS   rB   r   rf   r!   ra   )ri   outputsr#   r#   r$   _list_outputs   s    








zFitGLM._list_outputsN)
r   r   r   __doc__r   
input_specr%   output_specrs   rw   r#   r#   r#   r$   r0   [   s    r0   c               @   sN  e Zd Zejejejejejdejejejej	ejejejdejejejej	ejej	ejejejdejejejejejdejejejej	ejejejdejejejej	ejej	dddZ
eddddZejddZedd	ddZejd
ddZejddZejddZejddZeddZdS )EstimateContrastInputSpecrW   FaF  List of contrasts with each contrast being a list of the form:
            [('name', 'stat', [condition list], [weight list], [session list])]. if
            session list is None or not provided, all sessions are used. For F
            contrasts, the condition list should contain previously defined
            T-contrasts.T)r   r   z%beta coefficients of the fitted model)r   r   r   )r   z!squared variance of the residualszdegrees of freedom)r   N)r   r   r   r   r   ZEitherTupleStrr   r   	contrastsr   r&   r'   r(   r)   r*   r+   r,   r-   r   r#   r#   r#   r$   r{      sP   






r{   c               @   s6   e Zd ZeeddZeeddZeeddZdS )EstimateContrastOutputSpecT)r   N)r   r   r   r   r   	stat_mapsz_mapsp_mapsr#   r#   r#   r$   r   0  s   r   c               @   s(   e Zd ZdZeZeZdd Zdd Z	dS )EstimateContrastz.
    Estimate contrast of a fitted model.
    c             C   sP  dd l }dd l}dd ljjj}|j| jj}t	| jj
rT|j|j| jj
jdk}n|j|jd d dk}|j }|j|j|d d f j|_| jj|_|j|j| jjj| |_| jj|_| jj|_| jj|_| jj}g | _g | _g | _xZ| jjD ]L}	|	d }
|jt|}xBt |D ]6\}}||	d kr |	d j!|}|	d | ||< q W |j"|}|j|j}|j# j||< t$j%j&|
d }|j'|j(||j)| | jj*| |j|j}|j+ j||< t$j%j&|
d }|j'|j(|t,j)| | jj*| |j|j}|j- j||< t$j%j&|
d }|j'|j(|t,j)| | jj*| qW |S )Nr   r2   r   r   z_stat_map.niiz
_p_map.niiz
_z_map.nii).r:   r;   r<   r=   r>   r?   rF   rB   r&   r
   r   rG   rH   rI   rJ   rV   rQ   rW   r(   r)   r*   r,   re   r+   rd   r-   
_stat_maps_p_maps_z_mapsr   rN   rO   rR   indexcontraststatrX   rY   rZ   r\   r]   r^   rM   Zpvaluero   Zzscore)ri   rj   rk   rl   rm   Zbeta_niir   r?   r-   Zcontrast_defr4   r   rr   Zreg_nameidxZest_contrastZstat_mapZstat_map_fileZp_mapZ
p_map_fileZz_mapZ
z_map_filer#   r#   r$   rs   >  sT    




zEstimateContrast._run_interfacec             C   s.   | j  j }| j|d< | j|d< | j|d< |S )Nr   r   r   )rt   ru   r   r   r   )ri   rv   r#   r#   r$   rw   u  s
    


zEstimateContrast._list_outputsN)
r   r   r   rx   r{   ry   r   rz   rs   rw   r#   r#   r#   r$   r   6  s
   7r   )rX   baser   r   r   r   r   r	   r
   r   r%   r0   r{   r   r   r#   r#   r#   r$   <module>   s    
@ 9